NEWS
rdiversity 2.3.0 (2026-07-15)
- Fixed
repartition() for non-phylogenetic metacommunities: it previously passed a
bare similarity matrix to metacommunity(), which has not accepted matrices for a
while
- Added tests for
gen2dist(), inddiv(), repartition() and the high-level
diversity-measure wrappers
- Corrected the
gen2dist() documentation
- Removed the vendored
binary.R library; the taxonomic and genetic bit handling
is now implemented directly in base R
- Breaking:
as.binary() (and its associated S3 methods) is no longer
exported, as it was only ever an internal implementation detail
- Dropped the
reshape2 dependency (superseded upstream); the melt() calls in
inddiv()/subdiv()/metadiv() are replaced by a small internal base-R helper
- Migrated continuous integration from Travis CI and AppVeyor to GitHub Actions
- Added
lint, pr-commands and R-hub v2 (rhub) workflows
- Formatted the codebase with
styler and added a .lintr configuration so the
package passes lintr::lint_package() cleanly
- Added a
cran-comments.md template and tidied the repository (ignore rules,
build artefacts).
rdiversity 2.2.0 (2022-05-06)
- Added internal support for binary (base-2) number objects, used when encoding
taxonomic and genetic data as similarities (
taxid(), taxvec(),
taxmask()).
- Fixed CRAN check notes and corrected the package URL and maintainer field.
rdiversity 2.1.3
- Add dependency on markdown to fix win-builder warning
rdiversity 2.1.2
- Add vignette
- Remove deprecated functionality -
metacommunity() no longer allows matrices as a similarity argument
- Increase unit tests coverage
rdiversity 2.0 (2020-05-20)
- Standardised metacommunity input
- New functions added to calculate genetic similarity matrices
rdiversity 1.2.1 (2018-06-19)
- Fix problems that occur when user doesn't have row names in the partition object
- Update citation
rdiversity 1.2 (2018-06-12)
- Allow partition types to be input in any order, or with missing or additional types
- Tests added for new functionality
rdiversity 1.1
- Removed redundant argument
chainsaw(depth)
- Renamed
chainsaw(interval) to chainsaw(depth)
- Minor edits to documentation
rdiversity 1.0 (2017-06-27)
- Initial submission to CRAN